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Dynamics of Biomolecular Processes: From Atomistic Representations to Coarse-Grained Models from 27 February 2012 to 23 March 2012 Nordita

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Home > Timetable        Display options Show day - - all days - - 27-February-2012 28-February-2012 29-February-2012 01-March-2012 02-March-2012 03-March-2012 04-March-2012 05-March-2012 06-March-2012 07-March-2012 08-March-2012 09-March-2012 10-March-2012 11-March-2012 12-March-2012 13-March-2012 14-March-2012 15-March-2012 16-March-2012 17-March-2012 18-March-2012 19-March-2012 20-March-2012 21-March-2012 22-March-2012 23-March-2012 Show session - - all sessions - - Welcome and Opening Remarks Concluding remarks Detail level session contribution View mode Plain Parallel Room Session  [other views] Monday, 27 February 2012 08:00 Welcome breakfast & Registration (132:028: 08:30 - 09:15) 09:00 Welcome and Opening Remarks (132:028: 09:15 - 09:30) [250] Biomolecular force fields I by Prof. David VAN DER SPOEL (Uppsala University) (132:028: 09:30 - 11:30) 10:00 11:00 12:00   13:00 [251] Advanced Monte Carlo Methods by Prof. Ulrich HANSMANN (Department of Chemistry and Biochemistry, University of Oklahoma) (132:028: 13:00 - 15:00) 14:00 15:00 Coffee (132:028: 15:00 - 15:30) [255] DNA and DNA-protein interaction by Prof. Richard LAVERY (BMSSI, CNRS / Univ. Lyon I) (132:028: 15:30 - 17:30) 16:00 17:00 Tuesday, 28 February 2012 09:00 [253] Biomolecular force fields II by Prof. David VAN DER SPOEL (Uppsala University) (132:028: 09:30 - 11:30) 10:00 11:00 12:00   13:00 [254] Coarse-grained models for proteins I by Prof. Adam LIWO (University of Gdansk) (132:028: 13:00 - 15:00) 14:00 15:00 Coffee (132:028: 15:00 - 15:30) [264] Long-Timescale Molecular Dynamics Simulations of Protein Folding and Dynamics by Prof. Kresten LINDORFF-LARSEN (Copenhagen University) (132:028: 15:30 - 17:30) 16:00 17:00 Wednesday, 29 February 2012 09:00 [256] Parameterisation aspects of atomistic and coarse-grained models of biomolecules by Prof. Alessandra VILLA (Karolinska Institutet) (132:028: 09:30 - 11:30) 10:00 11:00 12:00   13:00 [260] Nucleation in peptide systems by Prof. Stefan AUER (Centre for Molecular Nanoscience, University of Leeds) (132:028: 13:00 - 15:00) 14:00 15:00 Coffee (132:028: 15:00 - 15:30) [258] Coarse-grained models for proteins II by Prof. Adam LIWO (University of Gdansk) (132:028: 15:30 - 17:30) 16:00 17:00 Thursday, 01 March 2012 09:00 [257] The internal dynamics of proteins I by Prof. Cristian MICHELETTI (SISSA) (132:028: 09:30 - 11:30) 10:00 11:00 12:00   13:00 [259] The internal dynamics of proteins II by Prof. Cristian MICHELETTI (SISSA) (132:028: 13:00 - 15:00) 14:00 15:00 Coffee (132:028: 15:00 - 15:30) [261] Hydrodynamic and mesoscopic simulations I by Prof. Jens HARTING (TU Eindhoven) (132:028: 15:30 - 17:30) 16:00 17:00 18:00 Reception (132:028: 18:00 - 20:00) 19:00 20:00   Friday, 02 March 2012 09:00 [262] The internal dynamics of proteins III by Prof. Cristian MICHELETTI (SISSA) (132:028: 09:30 - 11:30) 10:00 11:00 12:00   13:00 [263] Hydrodynamic and mesoscopic simulations II by Prof. Jens HARTING (TU Eindhoven) (132:028: 13:00 - 15:00) 14:00 15:00 Concluding remarks (132:028: 15:00 - 15:15) Monday, 05 March 2012 09:00 Welcome breakfast & Registration (132:028: 09:00 - 10:00) 10:00 [265] Coarse-grained simulations of DNA in confined geometries by Prof. Cristian MICHELETTI (International school for Advanced Studies (SISSA), Trieste, Italy) (132:028: 10:00 - 11:00) 11:00 Coffee break (132:028: 11:00 - 11:30) [270] PaLaCe: a coarse-grain model for studying the mechanical properties of proteins by Dr. Marco PASI (BMSSI, Lyon) (132:028: 11:30 - 12:30) 12:00 13:00   14:00   15:00 Coffee (132:028: 15:00 - 15:30) Tuesday, 06 March 2012 10:00 [267] Challenge to design new computational methodology: how to unlock cellular phenomena over extensive scales in time and space by Prof. Ilpo VATTULAINEN (Tampere University of Technology, Aalto University School of Science and Technology) (132:028: 10:00 - 11:00) 11:00 Coffee break (132:028: 11:00 - 11:30) [268] Entropic tension in crowded membranes by Prof. Martin LINDéN (Stockholm University) (132:028: 11:30 - 12:30) 12:00 13:00   14:00   15:00 Coffee (132:028: 15:00 - 15:30) Wednesday, 07 March 2012 10:00 [269] Fullerene interaction with lipid membranes: atomistic and coarse-grained simulation studies by Prof. Luca MONTICELLI (INSERM, Paris) (132:028: 10:00 - 11:00) 11:00 Coffee break (132:028: 11:00 - 11:30) [266] Coarse grained simulations of lipid bilayers by Prof. Friederike SCHMID (Mainz University) (132:028: 11:30 - 12:30) 12:00 13:00   14:00   15:00 Coffee (132:028: 15:00 - 15:30) Thursday, 08 March 2012 10:00 [271] Monte Carlo studies of protein aggregation by Prof. Anders IRBäCK (Computational Biology and Biological Physics, Lund University) (132:028: 10:00 - 11:00) 11:00 Coffee break (132:028: 11:00 - 11:30) [277] Modelling in molecular nanoscience by Prof. Stefan AUER (Centre for Molecular Nanoscience, University of Leeds) (132:028: 11:30 - 12:30) 12:00 13:00   14:00   15:00 Coffee (132:028: 15:00 - 15:15) 16:00   17:00   18:00 Conference dinner (132:028: 18:00 - 20:00) 19:00 20:00   Friday, 09 March 2012 10:00 [273] Parametrizing polarizable force fields based on the induced point dipole model by Prof. Emppu SALONEN (Aalto University) (132:028: 10:00 - 11:00) 11:00 Coffee break (132:028: 11:00 - 11:30) [274] Predictive power of computational chemistry - Do you get what you are paying for? by Prof. David VAN DER SPOEL (Uppsala University) (132:028: 11:30 - 12:30) 12:00 13:00   14:00   15:00 Coffee (132:028: 15:00 - 15:15) Monday, 12 March 2012 09:00 Welcome breakfast & Registration (132:028: 09:00 - 10:00) 10:00 [275] What is Temperature? Microcanonical Approach to the Statistical Mechanics of Molecular Systems by Prof. Michael BACHMANN (The University of Georgia) (132:028: 10:00 - 11:00) 11:00 Coffee break (132:028: 11:00 - 11:30) [276] SDAFlex: Simulating flexible macromolecules with Brownian dynamics by Dr. Michael MARTINEZ (Heidelberg Institute for Theoretical Studies) (132:028: 11:30 - 12:30) 12:00 13:00   14:00   15:00 Coffee (132:028: 15:00 - 15:30) Tuesday, 13 March 2012 10:00 [278] Approaches to multiscale modeling and design of biological molecules by Prof. Nikolay DOKHOLYAN (University of North Carolina) (132:028: 10:00 - 11:00) 11:00 Coffee break (132:028: 11:00 - 11:30) [279] Atomistic and Coarse Grained Simulations of Viral Capsids by Dr. Christoph GLOBISCH (Max-Planck-Institut für Polymerforschung, Mainz); Dr. Venkatramanan KRISHNAMANI (Carnegie Mellon University, Pittsburgh) (132:028: 11:30 - 12:30) 12:00 13:00   14:00   15:00 Coffee (132:028: 15:00 - 15:30) Wednesday, 14 March 2012 10:00 [280] Intrinsically Disordered Proteins At Work: Coupled Folding-Binding in a Simple Hydrophobic/Polar Model by Dr. Arnab BHATTACHERJEE (CBBP, Lund University) (132:028: 10:00 - 11:00) 11:00 Coffee break (132:028: 11:00 - 11:30) [281] Protein Folding without Homology or Machine Learning Techniques by Prof. Karl FREED (James Franck Institute, University of Chicago) (132:028: 11:30 - 12:30) 12:00 13:00   14:00   15:00 Coffee (132:028: 15:00 - 15:30) Thursday, 15 March 2012 10:00 [282] Exploring the landscape for protein folding: from function to molecular machines by Prof. Jose ONUCHIC (Center for Theoretical Biological Physics, University of California at San Diego) (132:028: 10:00 - 11:00) 11:00 Coffee break (132:028: 11:00 - 11:30) [283] Design and Prediction of Protein Self-assembly by Prof. Ingemar ANDRé (Center for Molecular Protein Science, Lund University) (132:028: 11:30 - 12:30) 12:00 13:00   14:00   15:00 Coffee (132:028: 15:00 - 15:30) 16:00   17:00   18:00 Conference dinner (132:028: 18:00 - 20:00) 19:00 20:00   Friday, 16 March 2012 10:00 [284] Cooperativity, Local-Nonlocal Coupling, and Nonnative Interactions in Protein Folding by Prof. Hue Sun CHAN (Departments of Biochemistry, of Molecular Genetics, and of Physics, University of Toronto) (132:028: 10:00 - 11:00) 11:00 Coffee break (132:028: 11:00 - 11:30) [285] Computer simulation of protein-protein association by Prof. Volkhard HELMS (Saarland University, Center for Bioinformatics) (132:028: 11:30 - 12:30) 12:00 13:00   14:00   15:00 Coffee (132:028: 15:00 - 15:30) Monday, 19 March 2012 09:00 Welcome breakfast & Registration (132:028: 09:00 - 10:00) 10:00 [296] Structure and dynamics of lipid bilayers from simulations by Prof. Olle EDHOLM (KTH) (132:028: 10:00 - 11:00) 11:00 Coffee break (132:028: 11:00 - 11:30) [287] Challenges in protein structure prediction by Prof. Arne ELOFSSON (Dep of Biochemistry and Biophysics, Stockholm University) (132:028: 11:30 - 12:30) 12:00 13:00   14:00   15:00 Coffee (132:028: 15:00 - 15:30) Tuesday, 20 March 2012 10:00 [288] Probabilistic models of protein structure: from theory to applications by Prof. Thomas HAMELRYCK (University of Copenhagen) (132:028: 10:00 - 11:00) 11:00 Coffee break (132:028: 11:00 - 11:30) [289] Predicting protein structure by solving the inverse Potts problem: a pseudo-likelihood approach by Prof. Erik AURELL (KTH) (132:028: 11:30 - 12:30) 12:00 13:00   14:00   15:00 Coffee (132:028: 15:00 - 15:30) Wednesday, 21 March 2012 10:00 [290] Bridging the gap: Linking molecular simulations and systemic descriptions of a chromatophore vesicle by Prof. Volkhard HELMS (Saarland University, Center for Bioinformatics) (132:028: 10:00 - 11:00) 11:00 Coffee break (132:028: 11:00 - 11:30) [291] Applications of multiscale modeling and design of biological molecules by Prof. Nikolay DOKHOLYAN (University of North Carolina) (132:028: 11:30 - 12:30) 12:00 13:00   14:00   15:00 Coffee (132:028: 15:00 - 15:30) Thursday, 22 March 2012 10:00 [294] How May a Protein Unknot a Knotted DNA? Statistical Physics of Local Inference of Global Topology by Topoisomerases by Prof. Hue Sun CHAN (Departments of Biochemistry, of Molecular Genetics, and of Physics, University of Toronto) (132:028: 10:00 - 11:00) 11:00 Coffee break (132:028: 11:00 - 11:30) [295] Automated real-space refinement of crystal and cryoEM structures using a realistic backbone move set by Prof. Karl FREED (James Franck Institute, University of Chicago) (132:028: 11:30 - 12:30) 12:00 13:00   14:00   15:00 Coffee (132:028: 15:00 - 15:30) 16:00   17:00   18:00 Conference dinner (132:028: 18:00 - 20:00) 19:00 20:00   Friday, 23 March 2012 11:00 Coffee (132:028: 11:00 - 12:00) 12:00

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