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Complex systems and Biological physics seminar


For the recent Complex systems and Biological physics seminars see
Home > Seminars > Complex systems and Biological physics seminar



 

o 2013
December 2013
10 export to personal scheduler Erika Hagrot and Hildur Æsa Oddsdóttir (KTH Biotechnology)
Simplification of complex metabolic networks by finding relevant pathways using optimization
  
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November 2013
26 export to personal scheduler Astrid de Wijn (SU)
Nanoscopic friction under electrochemical control
  
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12 export to personal scheduler Saikat Chatterjee (KTH Communication Theory)
SEK - Sparsity exploiting estimation of bacterial community composition
  
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05 export to personal scheduler Erik Aurell (KTH)
Another view on the MaxEnt fallacy
  
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October 2013
22 export to personal scheduler Raffaele Marino (Nordita/KTH)
Algorithms of optimization for K-SAT PROBLEM
  
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15 export to personal scheduler Nicolas Innocenti (KTH)
Spaghettis, Russian Science and RNA-seq
  
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September 2013
27 export to personal scheduler Cecilia Lövkvist (Niels Bohr Institute)
Bistable CpG-islands in an open sea of methylation
  
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May 2013
28 export to personal scheduler Yucheng Hu (Tsinghua University)
Stochastic cell lineage model under feedback control
  
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21 export to personal scheduler Martin Nilsson Jacobi (Chalmers)
Design of self-assembling systems
  
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14 export to personal scheduler Aymeric Fouquier d'Herouel (Institute for Systems Biology, Seattle)
Direct elicitation of template concentration from quantification cycle distributions in digital PCR
  
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February 2013
26 export to personal scheduler Jinzhi Lei (Tsinghua University, Beijing, China)
Protein Folding: A perspective from statistical physics
  
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21 export to personal scheduler Elena Agliari (University of Parma)
A statistical mechanics perspective on immune networks
  
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19 export to personal scheduler Claes Strannegård (Göteborg University)
Transparent neural networks: a cognitive architecture for automatic development of intelligence
  
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12 export to personal scheduler Jinzhi Lei (Tsinghua University )
Mathematical Modelling and Robustness of Morphogen Gradients
  
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05 export to personal scheduler Sigurdur Stefansson (Uppsala University)
Convergence of planar maps to a continuum tree
  
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January 2013
29 export to personal scheduler Henrik Unell (Nordea)
World growth in the new normal
  
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o 2012
December 2012
18 export to personal scheduler Supriya Krishnamurthy (Stockholm University)
On the behaviour of random K-SAT and Balanced SAT on trees
  
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11 export to personal scheduler Sorin Tanase Nicola (Uppsala University)
Thermodynamic limits on noisy cellular sensing
  
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04 export to personal scheduler Sebastiano Stramaglia (Univ. of Bari and INFN, Sezione di Bari)
Granger causality and the inverse Ising problem
  
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November 2012
27 export to personal scheduler Qin Li (Karolinska Institute)
Cancer Attractor - a systemic view of cancer by EBV models
  
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20 export to personal scheduler Remi Lemoy (Aalto University)
Statistical physics and urban housing market
  
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13 export to personal scheduler Hongli Zeng (Aalto University)
Network reconstruction for Ising models with asynchronous updates
  
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06 export to personal scheduler Daniel Rings (University of Leipzig)
Hot Brownian motion
  
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October 2012
30 export to personal scheduler Steven Lade (Stockholm Resilience Centre, SU)
Early warning of critical transitions in nature and society
  
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23 export to personal scheduler Astrid S. de Wijn (Stockholm University)
Chaos in lattices of many interacting classical spins
  
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16 export to personal scheduler Martin Lindén (Stockholm University)
Variational single molecule bioinformatics
  
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09 export to personal scheduler Cecilia Lövkvist (KTH)
Improved prediction of direct contact in protein structure with Potts model
  
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02 export to personal scheduler Antti Niemi (Uppsala University)
Strings, Integrable Models and Life Sciences - A New Frontier?
  
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September 2012
25 export to personal scheduler Ralf Eichhorn (Nordita)
Anomalous thermodynamics at the micro-scale
  
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18 export to personal scheduler Constantino Tsallis (CBPF, Rio de Janeiro)
Nonadditive entropy and applications in natural, artificial and social complex systems
  
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June 2012
26 export to personal scheduler Lan Yueheng (Tsinghua, Beijing, China)
Graph decomposition and functional dynamics analysis on cell regulation networks
  
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19 export to personal scheduler Sarah Hallerberg (Max Planck Institute Göttingen, Germany)
Do internal degrees of freedom trigger or destroy superdiffusive jumps in molecular diffusion?
  
event
12 export to personal scheduler Pinaki Chaudhuri (University of Mainz and University of Düsseldorf)
Confined flow of soft glassy materials
  
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February 2012
21 export to personal scheduler Jakob Nordström (KTH)
Understanding the Hardness of Proving Formulas in Propositional Logic
  
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14 export to personal scheduler Qin Li (KI)
TBA
  
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07 export to personal scheduler Nicolas Innocenti (KTH)
Fsec laser solid interactions on nanoscale semiconducting objects and their impact on imaging with 3D-atomic resolution in the Atomprobe
  
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January 2012
31 export to personal scheduler Magnus Ekeberg (KTH)
Predicting protein structure by solving the inverse Potts problem: a pseudo-likelihood approach
  
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24 export to personal scheduler Erico L. Rempel (Institute of Aeronautical Technology (ITA), Mathematics Department, Sao Jose dos Campos, SP, Brazil)
Lagrangian coherent structures in nonlinear dynamos
  
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17 export to personal scheduler Antti Honkela (Aalto University and HIIT)
Gaussian Process Models of Gene Expression and Transcriptional Regulation
  
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10 export to personal scheduler Rune Berg (Copenhagen University)
Precision in muscular control: Gain modulation in spinal motoneurons via voltage fluctuations
  
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o 2011
December 2011
20 export to personal scheduler Christian Karlewski (Nordita / Bielefeld University)
Internship Report - Numerical studies of optimal protocols in stochastic thermodynamics
  
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13 export to personal scheduler Per Rudquist (Chalmers University of Technology)
Liquid crystals on the move
  
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06 export to personal scheduler Oksana Manyuhina (Nordita)
Instability patterns in thin nematic films
  
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November 2011
29 export to personal scheduler John Wettlaufer (Nordita / Yale University)
Polar Seesaw's; persistence, noise and stability -- Part II
  
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22 export to personal scheduler Nicolas Innocenti (KTH)
Processing Genomic Signals
  
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08 export to personal scheduler John Wettlaufer (Nordita / Yale University)
Polar Seesaw's; persistence, noise and stability
  
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October 2011
25 export to personal scheduler Erik Aurell (KTH)
Dynamic cavity for kinetic Ising models
  
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20 export to personal scheduler Maria Zvyagolskaya (Stuttgart University)
Microfluidic sorting of chiral particles in helical flows
  
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September 2011
20 export to personal scheduler Raoul-Martin Memmesheimer (Radboud University, Nijmegen)
Learning sequences in spiking neural networks
  
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August 2011
30 export to personal scheduler Stefano Bo (KTH & University of Torino)
Optimal stochastic transport in temperature changing environments
  
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23 export to personal scheduler Jukka Corander (University of Helsinki)
Reconstructing population histories from molecular marker data
  
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July 2011
12 export to personal scheduler Alexandre Proutiere (KTH)
Ergodicity through Mean Field Asymptotics – Application to Decentralized Control in Communication Networks
  
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05 export to personal scheduler Antonio Celani (Institut Pasteur)
Bacterial strategies for chemotaxis
  
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May 2011
31 export to personal scheduler Erez Dekel (Weizmann Institute of Science)
Protein dynamics under drug combinations
  
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17 export to personal scheduler Heiner Linke (The Nanometer Structure Consortium at Lund University)
CANCELLED
  
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05 export to personal scheduler Oksana Manyuhina (Nordita)
Cell motility: A viscous fingering analysis of active gels [NEW TIME]
  
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April 2011
12 export to personal scheduler Virginio Cantoni (Universita' di Pavia, Italy)
(A few) Applications of pattern recognition techniques to proteomics
  
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March 2011
15 export to personal scheduler Yashar Ahmadian (Columbia U.)
Designing optimal stimuli to control neuronal spike timing
  
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February 2011
22 export to personal scheduler Astrid de Wijn (Radboud University Nijmegen, The Netherlands)
From microscopic nonlinear dynamics to macroscopic friction: low-friction sliding of nanocrystals
  
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15 export to personal scheduler Rickard Sandberg (KI)
Analyses of mammalian gene regulation using high-throughput sequencing data
  
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08 export to personal scheduler Mikko Vehkaperä (KTH Electrical Engineering)
Iterative Channel Estimation, Detection and Decoding in Large CDMA Systems
  
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01 export to personal scheduler Pär Kurlberg (KTH)
Nodal line statistics for arithmetic random waves
  
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January 2011
25 export to personal scheduler Fredrik Ullen (KI)
Analysing the creating brain - neural mechanisms of improvisation
  
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18 export to personal scheduler Sigurdur Stefansson (Nordita)
An exactly solvable special case of the vertex splitting model
  
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11 export to personal scheduler Michael Biehl (Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, The Netherlands)
Matrix Relevance Learning: basic concepts and applications in medicine
  
event

o 2010
December 2010
07 export to personal scheduler Aymeric Fouquier d'Herouel (KTH)
Simple and efficient screening for ncRNAs
  
event
November 2010
30 export to personal scheduler Mogens Høgh Jensen (Niels Bohr Institut)
Genetic Oscillations and Stress Responses in Eucaryotes
  
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19 export to personal scheduler Scott Kirkpatrick (Hebrew University of Jerusalem, Israel)
Power Laws Imply Fractal Objects
  
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09 export to personal scheduler Dhrubaditya Mitra (Nordita)
The Persistence Problem in Two-Dimensional Fluid Turbulence
  
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02 export to personal scheduler Måns Ehrenberg (Uppsala University)
Fitness cost of fluctuations in bacterial gene expression
  
event
October 2010
26 export to personal scheduler Ralf Eichhorn (Nordita)
Selective transport through periodic structures: directing Brownian motion and sorting chiral particles
  
event
19 export to personal scheduler Yasser Roudi (NTNU/Nordita)
Inferring the interaction in a nonequilibrium system using dynamical mean field theory
  
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05 export to personal scheduler Erik Lindahl (SU and KTH)
Modeling Membrane Proteins with Computers
  
event
September 2010
28 export to personal scheduler Erik Aurell (KTH)
On some optimization problems in stochastic thermodynamics
  
event
14 export to personal scheduler Björn Högberg (KI)
Building Molecular Tools from DNA
  
event
07 export to personal scheduler Aymeric Fouquier d'Herouel (KTH)
Simple and efficient screening for ncRNAs (CANCELLED)
  
event
August 2010
31 export to personal scheduler Bart Cleuren (Hasselt University, Belgium)
Inference of Hysteretic Vertical and Lateral Forces by Dynamic Force Microscopy
  
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03 export to personal scheduler Prasad Perlekar (Eindhoven University of Technology)
Life at high Reynolds number
  
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July 2010
20 export to personal scheduler Alessandro Treves (SISSA)
Neural latching dynamics: a percolation phase transition to sustained cognition
  
event
June 2010
22 export to personal scheduler A. C. C. Coolen (King's College, London)
Tailoring, counting and generating structured random graphs
  
event
08 export to personal scheduler Hans Behringer (Mainz University, Germany)
Molecular Recognition: Influence of Solvent Particles
  
event
01 export to personal scheduler Stefan Wennmalm (KTH)
Inverse-Fluorescence Correlation Spectroscopy: label-free analysis of biomolecules in solution.
  
event
May 2010
25 export to personal scheduler Angelo Vulpiani (Rome)
Temperature of small systems: a well defined quantity
  
event
18 export to personal scheduler Erik Fransén (KTH)
A dynamic view of neural excitability
  
event
11 export to personal scheduler Vitor Sessak (Ecole Normale Superior)
Inference of Hopfield patterns
  
event
04 export to personal scheduler Johan Elf (Uppsala)
Probing intracellular kinetics at the level of single molecules
  
event
April 2010
20 export to personal scheduler Jerker Widengren (KTH)
Ultrasensitive fluorescence spectroscopy and imaging - biomolecular studies and towards clinical diagnostics
  
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13 export to personal scheduler Alessandra Villa (KI)
On the way to coarse-grain biomolecular systems
  
event
06 export to personal scheduler Aymeric Fouquier d'Herouel (KTH)
FR-like binding repeats in the human genome
  
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March 2010
09 export to personal scheduler Ralf Eichhorn (NORDITA)
Chiral separation in a straight microchannel
  
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02 export to personal scheduler Henrik Sandberg (KTH Electrical Engineering)
The fluctuation-dissipation theorem - A control-theoretic perspective
  
event
February 2010
25 export to personal scheduler Sergei Maslov (Brookhaven National Laboratory, NY, USA)
Equilibrium and dynamical properties of protein binding networks
  
event
16 export to personal scheduler Ralf Eichhorn (NORDITA)
Transport Phenomena in Non-equilibrium Systems: Paradoxes and Benefits of Noise
  
event
09 export to personal scheduler Piepaolo Vivo (ICTP)
How many eigenvalues of a Gaussian matrix are positive?
  
event
02 export to personal scheduler Claire Tomlin (Berkeley and KTH)
Nonparametric Identification of Regulatory Interactions from Spatial and Temporal Gene Expression Data
  
event
January 2010
26 export to personal scheduler Yasser Roudi (NORDITA)
The Inverse Ising problem for Neural Data
  
event
19 export to personal scheduler Erik Aurell (KTH)
Gaussian Belief Propagation -- a survey and some experimental results
  
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o 2009
December 2009
11 export to personal scheduler David Nelson (Harvard)
Gene Surfing in Microorganisms
  
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November 2009
27 export to personal scheduler ()
  
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20 export to personal scheduler Ala Trusina (The Niels Bohr Institute)
How do cells detect, measure and respond to stresses?
  
event
13 export to personal scheduler Hamed Mahmoudi (Helsinki University of Technology)
Aligning graphs and finding substructures by message passing
  
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February 2009
27 export to personal scheduler Veli Mäkinen (Department of Computer Science, UNIVERSITY OF HELSINKI)
Storage and Retrieval of Individual Genomes
  
event

o 2008
November 2008
28 export to personal scheduler Jesper Tegner (KI Computational Medicine)
Medical Systems Biology : An overview of problems with examples
  
event
21 export to personal scheduler Aymeric Fouquier d'Herouel (KTH Computational Biology)
Prediction, detection and functional analysis of ncRNAs
  
event
14 export to personal scheduler Bhavani Shankar (KTH Signal Processing)
Spectrum Allocation for Decentralized Transmission Strategies: Properties of Nash Equilibria
  
event
07 export to personal scheduler Mahmoud Rafea (The Central Laboratory for Agricultural Expert Systems (CLAES), Egypt)
The Security Hole of the Immune System
  
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October 2008
31 export to personal scheduler Maria Werner (KTH Computational Biology)
Studies of migratory properties of carcinoma cell lines and the underlying molecular mechanism
  
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24 export to personal scheduler Francis Repoila (INRA)
Bacterial non-coding RNAs: looking for genes and functions
  
event
10 export to personal scheduler Véronique Chotteau (KTH Biotechnology)
Modelling of metabolic reaction network for the development of a nutrient cocktail for animal cell culture
  
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September 2008
26 export to personal scheduler Beom Jun Kim (KTH Computational Biology)
Family name distributions: Master equation approach
  
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19 export to personal scheduler Vladimir Vukadinovic (KTH EE/LCN)
Mobility models for pedestrian content distribution networks
  
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12 export to personal scheduler Beom Jun Kim (KTH Computational Biology)
Population and Facilities
  
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05 export to personal scheduler Naoki Honda (Kyushu University)
Stochastic Control of Spontaneous Signal Generation for Gradient Sensing in Chemotaxis
  
event
April 2008
29 export to personal scheduler Adam Dunkels (SICS)
Making sensor networks behave
  
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22 export to personal scheduler Fabio Sanchez (Department of Medicine, KI)
The diseasome vs the healthsome: should medicine redefine the concept of disease?
  
event
February 2008
26 export to personal scheduler Hans Ågren (Dept. of Theoretical Chemistry, KTH)
Photonics, electronics and spintronics of biological systems
  
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19 export to personal scheduler Joakim Enwall (Department of Linguistics and Philology, Uppsala University)
Ethnic Classification in the People’s Republic of China
  
event
12 export to personal scheduler Rickard Sandberg (Department of Cell and Molecular Biology, KI)
Widespread evasion of posttranscriptional regulation associated with proliferation
  
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05 export to personal scheduler Claes Johnson (CSC)
The Arrow of Time
  
event
January 2008
24 export to personal scheduler Beom Jun Kim (Sungkyunkwan University, Korea)
Dynamic Behaviors in Directed Networks
  
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o 2007
December 2007
18 export to personal scheduler Magnus Boman (SICS and KTH/DSV)
Virtual Plagues
  
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11 export to personal scheduler Martin Camitz (Swedish Institute of Infectious Disease Control, Karolinska Institute)
Macro versus micro in epidemic simulations
  
event
04 export to personal scheduler Fredrik Liljeros (Department of Sociology, Stockholm University)
Structural properties of large empirical social networks and their likely effects on the transmission of disease
  
event
November 2007
27 export to personal scheduler Jakob Nordström (CSC)
Short Proofs Are Narrow (Well, Sort of), But Are They Tight?
  
event
20 export to personal scheduler Torbjörn Nordling (Automatic Control, Electrical Engineering, KTH)
Reverse engineering of gene regulatory networks - constraints caused by intrinsic feedback
  
event
13 export to personal scheduler Håkan Hjalmarsson (Electrical Engineering, KTH)
Modeling congestion control mechanisms in the TCP
  
event
October 2007
23 export to personal scheduler Lenka Zdeborova (LPTMS, Orsay, France)
Phase transitions in constraint satisfaction problems
  
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16 export to personal scheduler Johan Elf, (Cell & Molecular Biology, Uppsala University)
Probing Transcription Factor Dynamics at the Single Molecule Level in a Living Cell
  
event
09 export to personal scheduler Erik Aurell (KTH Computational Biology)
Mezard's new theory for the cavity method
  
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02 export to personal scheduler No regular CS & BP seminar today (Collision with seminar series at KI)
What is Life?
  
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September 2007
25 export to personal scheduler Petter Holme (Computational Biology, CSC, KTH)
Efficiency of navigation in indexed networks
  
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