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Stockholm Bioinformatics Center Seminars Seminars in bioinformatics and computational biology   2010 December 2010 02 Christos Ouzounis (Centre for Research & Technology Hellas) Case studies in translational bioinformatics   June 2010 16 Wiktor Jurkowski (SBC) Development of ion channels activity ranking techniques on example of voltage gated potassium channel   09 Gabriel Östlund (SBC) Predicting the interactome from proteomics and genomics data   02 Kristoffer Forslund (SBC) Domain architecture conservation in orthologs   April 2010 21 Rolf Ohlsson (MTC/KI) The next level of gene regulation   07 Erik Lindahl (SBC) Understanding membrane protein insertion and ion channel function through molecular simulations   March 2010 17 Gunnar von Heijne (DBB) Insertion of membrane proteins into the ER - an update   10 Marcin Skwark (SBC) Consensus-based protein structure prediction by means of distance restraints   February 2010 17 Rossen Apostolov (SBC) Accelerated Molecular Dynamics on GPUs    15 Andrew Fraser (Donnelly Centre, Toronto University ) Mapping and predicting genetic interactions in C. elegans development   10 Karin Julenius (SBC) Intrinsic protein disorder and post-translational modifications   03 Thomas Helleday (Stockholm University ) RNAi screens to determine homologous recombination networks and identify anti-cancer drugs    2009 December 2009 02 Nattapon Thanintorn (SBC) OrthoDisease: A Disease Gene Orthologs Database   October 2009 14 David Gomez Cabrero (Clinical Gene Networks, Karolinska Institutet) Modeling human disease in the presence of model and parameter uncertainty: Atherosclerosis A-model   07 Itay Furman (Weizmann Institute) Some messages about messenger RNA: transcription, degradation, and noise    September 2009 23 Aron Hennerdal (SBC/CBR) Half of all large TM proteins are duplicated    09 Daniel Ayres (Center for Bioinformatics and Computational Biology, University of Maryland ) GPU computing for the tree of life   June 2009 03 Arne Elofsson (SBC) Folding of TM proteins, what happens after the translocon   May 2009 27 Joel Sjöstrand (KTH ) Probabilistic gene-species tree reconciliation with lateral transfers    13 Wiktor Jurkowski (SBC) Automated Modeling and Docking of GPCRs    April 2009 15 Lina Hultin-Rosenberg (KI) Multivariate meta-analysis of proteomics data from human prostate and colon tumours   08 Kristoffer Forslund (SBC) PhD programme halftime seminar: Protein function inference   February 2009 18 Jesper Gantelius (KTH) Protein microarrays for laboratory and on-site diagnosis - experimental methods and data analysis   11 Erik Aurell (KTH) Heuristics for solving constraint satisfaction problems    04 Elling Jacobsen (KTH) Structural Robustness and Fragility of Biochemical Networks   2008 December 2008 17 Anders Karlström (KTH) Neuroeconomics   10 Erik Sonnhammer (SBC) Employing conservation of co-expression to improve functional inference   03 Kristoffer Illergård (SBC) Changing the traditional picture of alpha-helical membrane proteins   November 2008 26 Karin Julenius (SBC) Prediction of glycosylation sites in proteins    19 Thomas Bürglin (Department of Biosciences and Nutrition, KI) Detection of Embryonic Gene Expression Dynamics    12 David Messina (SBC) DAS, the distributed annotation system, and how to aggregate shared data with it    05 Gabriel Östlund (SBC) Network-based identification of novel cancer genes   October 2008 22 Leif Andersson (Department of Medical Biochemistry and Microbiology, Uppsala University ) Cis-acting regulatory mutations play a prominent role for shaping phenotypic diversity in domestic animals    15 Stefan Hohmann (Department of Cell and Molecular Biology/Microbiology, Göteborg University ) Understanding signal transduction at a system level    01 Lars Arvestad (SBC/CSC) Probabilistic analysis of gene family evolution -- gene duplications and sequence evolution   September 2008 17 Patrik Björkhom (SBC) Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts   10 Kristoffer Forslund (Stockholm Bioinformatics Centre) Conservation of domain architecture and protein sequence in orthologs    August 2008 15 David Bryant (McGill Centre for Bioinformatics) Exact and efficient algorithms for the probability of a marker under incomplete lineage sorting   June 2008 11 Lukasz Huminiecki (KI) Genomic signatures for the emergence, development and diversification of the TGF-beta/BMP signaling pathway within the animal kingdom   04 Mathieu Blanchette (School of Computer Science, McGill University. McGill Center for Bioinformatics) Whole-genome comparative and regulatory genomics   May 2008 28 Erik Sjölund (SBC) Advices regarding CGI programming   21 Aron Hennerdal (SBC/CBR) Contact Prediction for Membrane Proteins   16 Erik Fransén (CBN) Ultra-slow dendritic EPSP-like potentials provides cellular integration   14 Ola Spjuth (Department of Pharmaceutical Biosciences, Uppsala University) Bioclipse - an open source workbench for chemo- and bioinformatics in the eScience era   14 Erik Sjölund (SBC) Advices regarding CGI programming   07 Mike Hallett ( McGill Centre for Bioinformatics, McGill University, Montreal, Canada) Towards a systems approach to understanding breast cancer   April 2008 25 Erik Aurell (CB) arbetsplatsmöte   23 Hans Ellegren (Evolutionary Biology Centre, Uppsala University) The Genomics of Phenotypic Diversity in Natural Populations   02 Diana Ekman (SBC/CBR) Species specific sequences in Fungi   March 2008 26 Henrik Nielsen (CBS, Technical University of Denmark) Prediction of protein sorting: current status and future plans   19 Jens Lagergren (SBC/CSC) Probabilistic analysis of orthology relations and duplication and loss rates two case studies   12 Åsa Björklund (SBC/CBR) Nebulin - a case study of repeat evolution   07 Elling Jacobsen, (S3) A control-theoretic approach to robustness analysis of biochemical networks   February 2008 27 Arne Elofsson (SBC/CBR) New challenges and methods for prediction of membrane protein topology   20 Ali Tofigh (SBC/CSC) A mathematical model for cancer progression   2007 December 2007 12 Örjan Åkerborg (SBC) A computational screen implicating A-to-I editing as a key mechanism in fine-tuning proteome diversity   05 Gabriel Östlund (SBC) Agreement between proteome and transcriptome: a study of correlation between two large-scale datasets   November 2007 28 David Messina (SBC) DAS, the distributed annotation system, and how to aggregate shared data with it    21 Aymeric Fouquier d'Herouel (KTH Computational Biology ) Function and Identification of ncRNA in Bacteria    14 Amilcar Flores (CMM, Karolinska Institutet) Molecular studies of SOCS action   07 Maria Werner (KTH Computational Biology) A computational study of the lambda-lac mutants    October 2007 31 Karin Julenius (SBC) Diagnosis of dementia in preclinical phase   17 Kristoffer Forslund (SBC) Models for domain functional interplay and Gene Ontology function prediction   10 Petter Holme (KTH Computational Biology) Structure & function of metabolic networks   03 Lars Engstrand (SMI, Karolinska Institutet) The normal microbiota in health and disease - use of high throughput techniques to reveal the human microbiome    September 2007 26 Lorand Levente & Alexey Kutsenko (MTC, Karolinska Institutet) Prediction of transcriptor factor binding site within the promoter region of one interesting gene. An approach practised by experimental biologists   19 Erik Sonnhammer (SBC) Phobius and its Distributed Annotation Service (DAS)   May 2007 23 Gunnar von Heijne (SBC/CBR) Identification and evolution of dual-topology membrane proteins   09 Björn Andersson (CMB, Karolinska Institutet) Metagenomic screening for new viruses; Bioinformatics challenges

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